Tonegawa Lab Research

The main research interest in my laboratory is to decipher brain mechanisms subserving learning and memory. We seek to understand what happens in the brain when a memory is formed, when a fragile short-term memory is consolidated to a solid long-term memory, and when a memory formed previously is recalled on subsequent occasions. We also seek to understand the role of memory in decision-making, and how various external or internal factors, such as reward, punishment, attention and the subject’s emotional state, affect learning and memory. In summary, we study how the central nervous system in the brain enables our mind, with a focus on learning and memory.

Because much of the fundamental processes of and neuronal mechanisms for memory are expected to be shared among mammals, and a vastly greater variety of experimental procedures is available for rodents than humans, we use laboratory mice as the primary model for memory research. With mice or other animals, memory can be monitored only through the behaviors. Thus, it is inevitable that we use a whole, live animal. At the same time, researchers must identify the crucial events and processes that are ongoing inside the brain, permitting the specific and diverse aspects of learning and memory. This latter task is the challenge for memory researchers and neuroscientists in general because the brains of higher organisms are incredibly complex—organized in a multilayer of complexity, from tens of thousands of molecules, to thousands of different types of cells, to hundreds of functionally and structurally distinct cellular assemblies, and extensive yet specific networkings of these assemblies.

In order to meet this challenge, we employ highly specific genetic manipulation techniques, creating mutant mouse strains in which a specific gene, and hence its gene product, such as neurotransmitter receptors and enzymes, is deleted or inactivated only in a specific type of cell (spatial restriction) and/or a specific period of a behaviorally defined learning or memory process (temporal restriction). Alternatively, the gene encoding the tetnus toxin can be introduced to a specific type of cell and activated in a temporally controllable manner to block a neural signal transmission. This technique, generally called the conditional transgenic method, can be accomplished by micro-manipulating mouse eggs or embryos using the site specific recombination system, Cre-loxP, and the tetracycline-controlled transcriptional system, tTA-Otet. Virus vector (AAV, Lenti, HSV, etc.)-mediated genetic manipulation can be combined with these conditional transgenic methods. Further, the recently invented optogenetic methods—including those based on the channel rhodopsin and halorhodopsin, which activate and inactivate neurons, respectively, at a millisecond timescale—can be combined with the Cre-loxP system to rapidly manipulate neural transmission in a specific cellular circuit.

We then subject these genetically engineered mouse strains along with the standard strain (called control mice) to a variety of analytical methods in order to detect the effect of the genetic manipulation (called phenotype detection). These methods include behavioral tasks (for example, maze and conditioning), recordings of cellular activities via single and multiple electrodes (in vivo electrophysiology with tetrodes and EEG) surgically implanted into a specific area of the brain, recordings of transmission at specific synapses of brain slices or cultured neurons (in vitro electrophysiology by field and patch clamp recordings), in vivo and in vitro optical imaging (with confocal and two-photon microscopy), and molecular and cellular biology. The abnormality one may observe in the genetically altered mouse strains in comparison with the control mice could be a deficiency or augmentation of a particular activity (phenotype). The phenotype observed at various levels of organizational complexities and associated specifically with the known genetic manipulation of the mutant will be very informative in the understanding the brain mechanisms subserving its behavior and cognition.

Research projects include studying the following
(*) Role of the direct EC→CA1 pathway in hippocampal learning and memory, and memory consolidation.
(*) Role of mossy fiber input from dentate gyrus granule cells in pattern completion and separation.
(*) Interaction of the trisynaptic and monosynaptic pathways, as well as subcortical pathways in novelty detection and novelty-triggered learning.
(*) Localization, visualization and modulation of memory engrams through the combined use of transgenic and optogenetic methods, such as channelrhodopsin and halorhodopsin.
(*) Mechanism for memory reconsolidation and extinction at the memory engram level.
(*) Role of protein-synthesis dependent LTP in memory consolidation.
(*) Roles of “preplay” in learning and “replay” in memory consolidation.
(*) Role of specific neural circuits involving neuromodulators (dopamine, serotonin and norepinephrine) in learning and memory, decision-making and control of behaviors.
(*) Role of PAK1 biochemical pathway in fragile X mental retardation.